#CC = gcc
CFLAGS = -DBSD -O
#CFLAGS = -DSYS5 -DSYSV -O
LIBS = -lm

OBJS = \
main.o check_argc_stem.o readfile_stem.o \
align_stem.o tria_stem2.o dp_stem.o make_alignment_stem.o \
tool_stem.o make_prof_stem1.o \
keep_memory_b.o keep_memory_s.o \
generateD_b.o dist_b_sds.o cost_b_stem1.o minimum_b.o \
generateD_s.o dist_s_sds.o cost_s_stem1.o minimum_s.o \
matrix_dna.o \
calc_energy.o

all: astem_o

astem_o: $(OBJS)
	cc -o astem_o $(OBJS) $(LIBS)

clean:
	rm -f $(OBJS)
